PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02909.1.g00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 213aa    MW: 24643.4 Da    PI: 5.9206
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02909.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.2e-35141042101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+ye+++d++++ ++ w+ +g+sfvv ++ +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+
  Zmw_sc02909.1.g00120.1.sm.mk  14 FLSKTYEMVDDPATDAVVAWTPSGTSFVVANQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFA 85 
                                   9***************************************************************9998.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++ F +g+++ l++i+r+k
  Zmw_sc02909.1.g00120.1.sm.mk  86 NEDFIRGQRHRLKNIRRRK 104
                                   *****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.98E-359103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-221437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-225264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-226577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEESGGGESS LPPFLSKTYE MVDDPATDAV VAWTPSGTSF VVANQADFCR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKVDPE QWEFANEDFI RGQRHRLKNI RRRKPIFSHS SHTQGSPVAD  120
HERREYEEEI LRLKDDNATL RSELENNAEK KLLTERRMQE LEDKLIFLED QTGPSRDQHV  180
EDPPAVAPGS SLGQMHIRRP NQSAEMEIIR LNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-31610312120Heat shock factor protein 1
5d5u_B3e-31710322129Heat shock factor protein 1
5d5v_B3e-31710322129Heat shock factor protein 1
5d5v_D3e-31710322129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456359.11e-106hypothetical protein SORBIDRAFT_03g034630
SwissprotQ94J167e-95HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLC5XK401e-106C5XK40_SORBI; Putative uncharacterized protein Sb03g034630
STRINGSb03g034630.11e-105(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778